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  EML Research Annual Report: 2007 (pdf)



    Pachov, G.
    Linker Histone-Nucleosome Interactions: A Modelling and Simulation Study.
    PhD. thesis (2009) Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University of Heidelberg, Germany.

    Berynskyy, M.
    Automatisierte Analyse von Brownian Dynamics Simulationen
    Diplom thesis (2009) Bioinformatics, Giessen-Friedberg University of Applied Sciences, Germany.

    Motiejunas, D.
    Modeling of macromolecular interactions.
    PhD. thesis (2007) Combined Faculties of the Natural Sciences and for Mathematics, Ruperto-Carola University of Heidelberg, Germany. Zahran, M.
    Analyse a haut debit des proprietes electrostatiques des proteines de la famille des ubiquitines (High-throughput analysis of the electrostatic properties of proteins of the ubiquitin family)
    Masters thesis (Bioinformatics) (2006) University Paris VII, France. Johann, T.I.
    Perturbation Methods in Molecular Dynamics Simulations with Implicit Solvent Models
    Diploma Thesis/Diplomarbeit (Physics) (2005) University of Heidelberg, Germany.

    Ulbrich, S.
    The Protein Structure Annotation Tool ProSAT2
    Studienarbeit (Computer Science) (2005) University of Karlsruhe, Germany.

    Besson, B.
    Development of a software to aid the search of protein structural information to estimate kinetic parameters in systems biology applications
    Internship report, Masters degree (Bioinformatics and Modeling) (2005) National Institute of Applied Science (INSA) Lyon, France.

    Motiejunas, D.
    Protein-protein docking assisted by sequence conservation and experimental data
    Masters Thesis (Molecular Biology) (2004) University of Heidelberg, Germany.

    Hallingbaeck, H. R.
    Peroxidases: A computational study of ligand binding and enzyme kinetics
    Masters Thesis (Molecular Biotechnology) (2004) Uppsala University School of Engineering, Uppsala, Sweden.


    Neumann, G. F.
    Entwicklung einer erweiterten Anwendung der Hauptkomponentenanalyse fuer das Protein-Protein Dockingproblem
    Diplomarbeit (Physics) (2003) Ruprecht-Karls-Universitaet, Heidelberg, Germany.

    Noubibou Doudieu, O.M.
    Using Sequence Information in Protein Docking Procedures
    Masters Thesis (Bioinformatics) (2003) University of Applied Sciences, Berlin, Germany.


    Gonzalez, A.
    Glycolytic Pathway Reaction Animations
    Diplomarbeit (Biology) (2001) University of Heidelberg, Germany.


    Battey, J. N. D.
    High-throughput Structural and Electrostatic Modelling of Ubiquitin Conjugating Enzymes
    Masters thesis (Bioinformatics) (2003), Exeter University, Exeter, United Kingdom.

    Pulagam, V. L. Padmavathi
    Structure-based design of inhibitors of enzymes of the ubiquitin mediated protein degradation pathway
    Diploma (Bioinformatics) (2003) Cologne University Bioinformatics Center, University of Cologne, Germany.

    Nardi, F.
    Molecular Dynamics and NMR Spectroscopic Studies of Local Interactions of Small Peptides in Aqueous Solution Involving Aromatic Residues
    Ph. D. (1999) Universite Joseph Fourier, Grenoble, France.

    Kobayashi, M.
    Chloride ion exchange routes in Haloalkane Dehalogenase from Xanthobacter autrophicus detected by Thermal Motion Pathway analysis, GRID and Essential Dynamics
    M. Res. External Placement Project (1999) University of York, England.

    Gauges, R.
    Molekulardynamische Simulation zur Aufklaerung des Substratzuganges in Cytochrom P450eryF
    Diplom (1999) Eberhard-Karls-Universitaet, Tubingen, Germany. Reimer, N.
    Dynamische Einstellung des Parallelitaetsgrades mit reflexiven Programmen
    Diplom (1996) University of Karlsruhe, Germany.

    Ortiz, A.R.
    Rational design of Human Synovial Fluid Phospholipase A2 inhibitors and analysis of their three-dimensional structure-activity relationships
    Ph. D. (1996) University of Alcala de Henares, Madrid, Spain.

    Helms, V.
    Hydratation des aktiven Zentrums von Cytochrom P450cam - Untersuchung mit Molekueldynamik-Simulationen
    Ph. D. (1996) Ludwig-Maximilians-Universitaet, Muenchen, Germany. Degenhardt, M.
    De-Novo Design von Liganden zur Blockierung der Substratzugaenlichkeit von Cytochrom P450cam
    Diplom (1995) Ruprecht-Karls-Universitaet, Heidelberg, Germany.

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