This webpage contains pointers to selected sources and is based on the the talk on "Molecular modeling of proteins" given by Rebecca Wade at the CEB Biocrystallography course in Trieste on 11.09.03. NB - it is not a comprehensive listing!

• Can protein structures be predicted from first principles by simulation of protein folding?
• Folding@Home
• http://www.stanford.edu/group/pandegroup/folding/
• How are prediction methods doing?
• CASP - Critical Assessment of Techniques for Protein Structure Prediction
• http://predictioncenter.llnl.gov/
• Comparative modeling:
• http://salilab.org/modeller/methenz/
• http://www.cmbi.kun.nl/gv/articles/text/gambling.html
• http://www.expasy.org/swissmod/SWISS-MODEL.html
• Fold recognition and secondary structure prediction:
• http://predictioncenter.llnl.gov/other/interesting.html
• From protein structure to function?
• http://projects.villa-bosch.de/mcm/database/prosat
• http://projects.villa-bosch.de/mcm/software/pipsa
• Proteins are dynamic!
• http://projects.villa-bosch.de/mcm/database/dsmm