Version history and availability of PIPSA
(Protein Interaction Property Similarity Analysis)
Versions:
Version 1.0 was
developed
at EMBL, Heidelberg, Germany.
Version 2.0 was
developed
at EML Research gGmbH, Heidelberg, Germany.
Changes in the
version
2.0 are:
The programs rewritten to make
the parameter
usage more transparent - previous parameter input from the files is
changed
to the input via command line;
Fixed subdirectory hierarchy is
replaced
via user-defined, e.g. calculations can be done in any chosen directory;
Only an upper part of the
similarity
matrix is calculated, thus the computations for a set of n protens are
done not for n*n but n*(n+1)/2 pairs;
Enabled a possibility to add
extra
proteins to already processed set of proteins;
Added phylogenic tree analysis;
Added APBS electrostatic
potential based analysis;
Added several auxiliary
programs.
Availability:
The current version of PIPSA (Protein Interaction Property Similarity
Analysis) may be downloaded from this page.