LIST OF COMPLEXES

1. Enzyme-inhibitor

Complex pdb	Receptor pdb	Ligand pdb	Receptor	Ligand
1ppf resolution =1.8A	1ppg resolution=2.3A no residues=218	2ovo resolution=1.50A no residues=56	human leukocyte elastase	Ovomucoid third domain (Proteinase inhibitor)	Camacho Vajda
1cho resolution = 1.8A	5cha resolution=1.67A	2ovo resolution=1.50A no residues=56	Alpha-chymotrypsin	Ovomucoid third domain (Proteinase inhibitor)	Camacho Vajda/ Chen Weng (2002)/ Nuno Palma et al. (2000)/ Gabb et al. (1997)/ Moont et al. (1999)
1cho resolution = 1.8A	5cha resolution=1.67A	1omu NMR no residues=56	Alpha-chymotrypsin	Ovomucoid third domain (Proteinase inhibitor)	Fernandez-Recio et al. (2002)
1cho resolution = 1.8A	5cha resolution=1.67A no residues=237	1ovo resolution = 1.90 no residues = 56	Alpha-chymotrypsin	Ovomucoid third domain (Proteinase inhibitor)	Heifetz et al. (2002)
# 1cbw resolution= 2.6	5cha resolution=1.67A no residues=237	1bpi resolution =1.10	Alpha-chymotrypsin	BPTI	Fernandez-Recio et al. (2002)
1fss resolution=3.00	2ace resolution= 2.5 no residues=527	1fsc resolution=2.00 no residues= 61	Acetylcholinesterase	fasciculin-II	Camacho Vajda/ Chen Weng (2002)/ Nuno Palma et al. (2000)
1mah resolution =3.2	1maa resolution =2.9 no residues = 540	1fsc resolution=2.00 no residues= 61	Mouse Acetylcholinesterase	fasciculin-II	Chen Weng (2002)
2sic resolution = 1.80	2st1 resolution = 1.80 no residues = 275	3ssi resolution = 2.30 no residues 108	Subtilisin BPN' (=subtilisin novo)	streptomyces subtilisin inhibitor	Camacho Vajda/ Fernandez-Recio et al. (2002)/ Nuno Palma et al. (2000)
2sic resolution = 1.80	1sup resolution =1.6 no residues =275	3ssi resolution = 2.30 no residues 108	Subtilisin BPN' (=subtilisin novo)	streptomyces subtilisin inhibitor	Chen Weng (2002)
1brs resolution=2.00	1a2p resolution=1.50 no residues= 108	1a19 resolution=2.76 no residues = 89	barnase	barstar	Camacho Vajda/ Nuno Palma et al. (2000)
2ptc resolution= 1.90	2ptn resolution = 1.55 no residues = 223	6pti resolution = 1.70 no residues = 57	Beta-trypsin	BPTI	Camacho Vajda
2ptc resolution= 1.90	2ptn resolution = 1.55 no residues = 223	4pti resolution=1.50 no residues=58	Beta-trypsin	BPTI	Lorber et al. (2002) /Heifetz et al. (2002)/ Nuno Palma et al. (2000)/ Gabb et al (1997)/ Moont et al. (1999)
2ptc resolution= 1.90	2ptn resolution = 1.55 no residues = 223	4pti resolution = 1.50 no residues = 58	Beta-trypsin	BPTI	Heifetz et al. (2002)
2ptc resolution= 1.90	5ptp resolution=1.34 no residues = 223	1bpi resolution =1.10	Beta-trypsin	BPTI	Fernandez-Recio et al. (2002)
2sni resolution= 2.10	2st1 resolution= 1.8 no residues = 275	2ci2 resolution = 2.00 no residues = 65	Subtilisin novo	chymotrypsin inhibitor 2	Camacho Vajda / Lorber et al. (2002)/ Fernandez-Recio et al. (2002)/ nuno Palma et al. (2000)
2sni resolution= 2.10	1sup resolution =1.6 no residues =275	2ci2 resolution = 2.00 no residues = 65	subtilisin novo	chymotrypsin inhibitor 2	Chen Weng (2002)/ Gabb et al. (2000)/ Moont et al. (1999)
2sec resolution = 1.80	1scd resolution = 2.30 no residues = 274	1tec resolution = 2.20 no residues = 63 (the ligand is not alone)	Subtilisin carlsberg	eglin-C	Heifetz et al. (2002)
1smf resolution = 2.10 (complexed with peptide)	2ptn resolution = 1.55 no residues = 223	1pi2 resolution = 2.50 no residues = 61	Trypsin	bowman-birk inhibitor
1bth resolution = 2.30	4htc resolution = 2.30 no residues = 258 (the protein is compled with other ligand)	4pti resolution = 1.50 no residues = 58	thrombin	BPTI
1jtd resolution = 2.30	1btl resolution = 1.80 no residues = 263	no structure	tem-1 beta-lactamase	beta-lactamase inhibitor protein-ii
1acb resolution = 2.00	5cha resolution = 1.67 no residues = 237	1egl NMR no residues = 70	Alpha-chymotrypsin	eglin c	Fernandez-Recio et al. (2002)
1cse resolution = 1.20	1sbc resolution = 2.50 no residues = 274	1egl NMR no residues = 70	Subtilisin carlsberg	eglin c	Fernandez-Recio et al. (2002)
2tec resolution = 1.98	1thm resolution=1.37 no residues = 279	1egl NMR no residues = 70	Thermitase	eglin c	Fernandez-Recio et al. (2002)
# 1ca0 resolution = 2.1	5cha resolution=1.67 no residues=237	1aap resolution=1.50 no residues=56	alpha-chymotrypsin	Protease inhibitor domain of alzheimer's amyloid beta-protein precursor	Fernandez-Recio et al. (2002)
# 1cgi resolution = 2.3	1chg resolution=2.5 no residues=230	1hpt resolution=2.3 no residues=56	Alpha-chymotrypsinogen	pancreatic secretory trypsin inhibitor variant 3	Fernandez-Recio et al. (2002)/ Chen Weng (2002)/ Nuno Palma et al. (2000)/ Gabb et al. (1997)
# 2kai resolution=2.5	2pka resolution = 2.05 no residues =	1bpi resolution = 1.10 no residues = 58	Kallikrein a	BPTI	Fernandez-Recio et al. (2002)/ Nuno Palma et al. (2000)/ Gabb et al. (1997)/ Moont et al (1999)
# 2kai resolution=2.5	2pka resolution = 2.05 no residues =	6pti resolution = 1.70 no residues = 57	Kallikrein a	BPTI	Chen Weng (2002)
# 1taw resolution = 1.8	5ptp resolution=1.34 no residues=223	1aap resolution=1.50 no residues=56	Trypsin	Protease inhibitor domain of alzheimer's amyloid beta-protein percursor	Fernandez-Recio et al. (2002)
# 3tgi resolution=1.8	1ane resolution=2.2 no residues=223	1bpi resolution = 1.10 no residues = 58	anionic trypsin	BPTI	Fernandez-Recio et al. (2002)
1brc resolution=2.5	1bra resolution=2.2 no residues=223	1aap resolution=1.50 no residues= 56	Trypsin variant	Protease inhibitor domain of alzheimer's amyloid beta-protein precursor	Fernandez-Recio et al. (2002)
1bvn resolution=2.5	1pif resolution=2.3 no residues=496	2ait NMR	pancreatic alpha-amylase	tendamistat	Fernandez-Recio et al. (2002)
1ay7 resolution=1.70	1rge resolution=1.15 no residues=96	1a19 resolution=2.76	guanyloribonuclease	Barstar (c82a mutant)	Fernandez-Recio et al. (2002)
1ugh resolution=1.9	1akz resolution=1.57 no residues=223	2ugi resolution=2.2 no residues=83	uracil-DNA glycosylase	Glycosylase inhibitor	Fernandez-Recio et al. (2002)/ Chen Weng (2002)

2. Antibody-antigen

Complex pdb	Receptor pdb	Ligand pdb	Receptor	Ligand
1mlc resolution = 2.10	1mlb resolution = 2.10 no residues = 214+218	1lza resolution = 1.60 no residues = 129	antibody fab d44.1	chicken egg-white lysozyme	Camacho Vajda/ Fernandez-Recio et al. (2002)/ Chen Weng (2002)/ Nuno Palma et al (2000)/ Gabb et al. (1997)
1vfb resolution = 1.80	1vfa resolution = 1.80 no residues = 108	1lza resolution = 1.60 no residues = 129	IgG1 fab fragment d1.3	hen egg lysozyme	Fernandez-Recio et al. (2002)/ Chen Weng (2002)
1fdl resolution = 2.5	1vfa resolution = 1.80 no residues = 108	1lza resolution = 1.60 no residues = 129	IgG1 fab fragment d1.3	hen egg lysozyme	Nuno Palma er al. (2000)/ Gabb et al. (1997)
1vfb resolution = 1.80	1vfa resolution = 1.80 no residues = 108	132L resolution=1.8 no residues = 129	antibody d1.3	hen egg lysozyme	Lorber et al. (2002)
1vfb resolution = 1.80	1vfa resolution = 1.80 no residues = 108	1hel reolution = 1.70 no residues = 129	antibody d1.3	hen egg lysozyme
3hfm resolution = 3.0	3hfm * resolution = 3.0	1lza resolution = 1.60 no residues = 129	IgG1 fab fragment (hy HEL -10)	chicken egg-white lysozyme	Chen Weng (2002)
2jel resolution = 2.5	2jel * resolution = 2.5	1poh resolution = 2.0	Jel42 fab fragment	Histidine phosphocarrier protein (HPr)	Chen Weng (2002)
1bql resolution = 2.6	1bql * resolution = 2.6	1dkj resolution = 2.0	IgG1 fab fragment (hu HEL-5)	Bobwhite quail lysozyme	Chen Weng (2002)
1jhl resolution = 2.4	1jhl * resolution = 2.4	1ghl resolution = 2.1 no residues = 130	IgG1 Fv d11.15 fragment	pheasant egg lysozyme	Chen Weng (2002)
1fbi resolution = 3.00	1fbi * resolution = 3.00	1hhl resolution = 1.9 no residues = 129	IgG1 Fv f9.13.7 fragment	Guinea fowl lysozyme	Chen Weng (2002)
1iai resolution = 2.9	1iai * resolution = 2.9	1aif resolution = 2.9	IgG1 Idiotypic Fab 730.1.4	Igg2A Anti-idiotypic fab 409.5.3	Chen Weng (2002)
1mel resolution = 2.5	1mel * resolution = 2.5	1lza resolution = 1.60 no residues = 129	Vh single-domain antibody	chicken egg-white lysozyme	Chen Weng (2002)
1igc resolution = 2.6	1igc resolution = 2.6	1igd resolution = 1.1 no residues = 61	Igg1 fab fragment (mopc21)	Protein g (Immunoglobulin binding protein)	Chen Weng (2002)

3. Electron transport

Complex pdb	Receptor pdb	Ligand pdb	Receptor	Ligand
2pcb resolution=2.8	1ccp resolution=2.2 no residues = 293	1hrc resolution=1.9 no residues = 105	Yeast cytochromE C peroxidase	horse heart cytochromE C	Fernandez-Recio et al. (2002)/ Nuno Palma et al. (2000)
2pcf NMR	1ctm resolution=2.3 no residues=250	1ag6 resolution=1.7 no residues=99	cytochrome f	plastocyanin	Fernandez-Recio et al. (2002)
2pcc resolution = 2.3	1ccp resolution = 2.2 no residues = 293	1ycc resolution = 1.23 no residues = 108	Yeast cytochromE C peroxidase	yeast iso-1-cytochromE C	Chen Weng (2002)/ Nuno Palma et al. (2000)

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