Data file : /work/gaia/wang/mutation/all/golpBNBS65_uhbd_G.dat Comment : Extraction from /work/gaia/wang/mutation/all/golpBNBS65_uhbd.dat Number of variables = 19589 Number of experiments = 65 Number of X-variables = 19582 , Y-variables = 1 Active X-variables (SS > 1.0E-7) = 827 Active Y-variables (SS > 1.0E-7) = 1 Active X-variables after PRETREATMENT = 827 Active Y-variables after PRETREATMENT = 1 >> 1 WTWTWTWT >> 2 WTWTK27A >> 3 WTWTR59A >> 4 D39AR59A >> 5 WTWTR87A >> 6 WTWTH10A >> 7 Y29FWTWT >> 8 Y29AWTWT >> 9 D35AWTWT >> 10 W38FWTWT >> 12 T42AWTWT >> 13 W44FWTWT >> 14 E76AWTWT >> 15 E80AWTWT >> 16 Y29AK27A >> 17 D35AK27A >> 18 W38FK27A >> 19 D39AK27A >> 20 T42AK27A >> 21 E76AK27A >> 22 E80AK27A >> 23 Y29AR59A >> 24 D35AR59A >> 25 W38FR59A >> 26 T42AR59A >> 27 E76AR59A >> 28 E80AR59A >> 29 Y29AR83Q >> 30 D35AR83Q >> 31 W38FR83Q >> 32 D39AR83Q >> 33 T42AR83Q >> 34 E76AR83Q >> 35 E80AR83Q >> 36 Y29AR87A >> 37 T42AR87A >> 38 E76AR87A >> 39 E80AR87A >> 40 Y29AH10A >> 41 Y29FH10A >> 42 W38FH10A >> 43 D39AH10A >> 44 T42AH10A >> 45 E76AH10A >> 46 E80AH10A >> 47 D35AE73W >> 48 D39AE73A >> 49 D39AE73Q >> 50 E76AE73Q >> 51 WTWTE73A >> 52 WTWTE73C >> 53 WTWTE73F >> 54 WTWTE73Q >> 55 WTWTE73S >> 56 WTWTE73Y >> 60 D35AE73A >> 61 D35AE73F >> 62 D39AE73F >> 63 D39AR87A >> 64 E76AE73W >> 65 W38FR87A >> 66 WTWTE73W >> 67 WTWTR83Q >> 68 D39AE73W >> 65 D39AWTWT Principal Component Analysis (PCA) 65 objects 827 X-var components XVarExp XAccum 1 39.8393 39.8393 2 21.3003 61.1396 3 11.9795 73.1190 4 10.5615 83.6806 5 7.7668 91.4474 PCA Rank Validation - using 4 random groups components PRESS Seps R 1 1.4317e+05 1.1043e+05 1.2965 2 2.6580e+05 6.5393e+04 4.0646 3 8.2566e+04 4.1568e+04 1.9863 4 2.2767e+04 2.8288e+04 0.8048 5 1.0532e+04 1.6891e+04 0.6235 Partial Least Squares (PLS) 65 objects 827 X-var 1 Y-var Y1 components XVarExp XAccum SDEC r2 0 0.0000 0.0000 2.5536 0.0000 1 36.6474 36.6474 1.8556 0.4720 2 19.5361 56.1835 1.6460 0.5845 3 13.2966 69.4800 1.5611 0.6263 4 6.0182 75.4982 1.4524 0.6765 5 4.5306 80.0289 1.3076 0.7378 6 6.0341 86.0629 1.1207 0.8074 7 7.6318 93.6948 0.9635 0.8576 8 2.3442 96.0390 0.8677 0.8846 9 0.9254 96.9644 0.7261 0.9191 10 0.4859 97.4503 0.6463 0.9359 PLS Model Validation - LOO Y1 components SDEP SDEV(sdep) q2 0 2.5935 - -0.0315 1 1.9481 - 0.4180 2 1.7780 - 0.5152 3 1.7277 - 0.5423 4 1.7193 - 0.5467 5 1.6580 - 0.5784 6 1.4736 - 0.6670 7 1.3458 - 0.7223 8 1.2420 - 0.7635 9 1.0447 - 0.8326 10 1.0150 - 0.8420 Deleted unselected vars. (D-Optimal) 2 : 827 -> 413 Comp.=7 , Mon Oct 21 10:58:24 2002 Active X-variables after VAR. SELECT. = 413 *** FFD Variable Selection Started *** Max. dimensionality : 7 Validation Mode : LOO Recalculate weights : yes Comb./Var. ratio : 2.0 Use groups : Uncertains : Retain Fold-over design : no perc. of dummies : 20