3rd Workshop on Computation of Biochemical Pathways
and Genetic Networks


Villa Bosch
Heidelberg
October 6-7, 2003

Program


Monday, 6th

08:30 - 09:00 Registration
09:00 - 09:15 Welcome and Organisatorial Issues

09:15 - 12:00 Session 1: Complexity Reduction of Biochemical Networks



09:15 - 09:55 Discovery and Analysis of Biochemical Subnetwork Hierarchies (Petter Holme, Copenhagen Denmark)
09:55 - 10:35 Hierarchies and Modularity in Metabolic Networks (Jrg Stelling, Megdeburg, Germany)
10:35 - 11:00 Coffee break
11:00 - 11:40 Reduction of Biochemical Models Using Functional Iteration (Marc Roussel, Lethbridge, Alberta, Canada)
11:40 - 12:00 General discussion of the session
12:00 - 14:00 Lunch break and posters

14:00 - 17:00 Session 2: Simulation Methodology



14:00 - 14:40 From Macro to Multi-Level Models in Systems Biology (Adelinde Uhrmacher, Rostock, Germany)
14:40 - 15:20 Systems Biology and Automata (Alberto Policriti, Udine, Italy)
15:20 - 16:00 Coffee break
16:00 - 16:40 Transition from Stochastic to Deterministic Behaviour in Dependence on the Divergence of the System (Marko Marhl, Maribor, Slovenia)
16:40 - 17:00 General discussion of the session

18:30 Workshop dinner


Tuesday, 7th


09:15 - 12:00 Session 3: Analysis of the Dynamics of Biochemical Processes



09:15 - 09:55 Classification and Deduction of Reaction Mechanisms by Using Bifurcation Diagrams and Stoichiometric Network Analysis (Igor Schreiber, Prague, Czech Republic)
09:55 - 10:35 Mathematical and Numerical Analysis of Cellular Networks (Markus Kirkilionis, Warwick, England)
10:35 - 11:00 Coffee break
11:00 - 11:40 Dynamic Pathway Modelling: From Models to Cells (Olaf Wolkenhauer, Rostock, Germany)
11:40 - 12:00 General discussion of the session

12:00 - 14:00 Lunch break and posters


14:00 - 17:00 Session 4: Genetic Networks



14:00 - 14:40 Partial Estimation of the Jacobian from Time Course Data (Stefan Hoops, Blacksburg, VA, USA)
14:40 - 15:20 Inference of Genetic Networks from Mutant Data (Blaz Zupan, Ljubljana, Slovenia)
15:20 - 15:50 Coffee break
15:50 - 16:30 General discussion of the session and the workshop
16:30 End of workshop

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