EML



2nd Workshop on Computation of Biochemical Pathways
and Genetic Networks


Villa Bosch
Heidelberg
June 21-22, 2001

Program


Thursday, 21st

08:00 - 08:45 Registration
08:45 - 09:00 Welcome and Organisatorial Issues

09:00 - 12:15 Session 1: Topology of Biochemical Networks

Chair: Stefan Schuster, Berlin, Germany

09:00 - 09:40 Emergence of scaling in metabolic and protein networks (Albert-Lszl Barabsi, Notre Dame, IN, USA)
09:40 - 10:20 The small world inside large metabolic networks (David Fell, Oxford, England)
10:20 - 10:45 Coffee break
10:45 - 11:25 Mapping the cellular protein interactions - the database of interacting proteins (Ioannis Xenarios, Los Angeles, CA, USA)
11:25 - 12:15 General discussion (Chaired by Zoltan N. Oltvai, Chicago, USA)

12:15 - 14:00 Lunch break and poster session


14:00 - 18:30 Session 2: Genetic networks

Chair: Marie-France Sagot, Paris, France

14:00 - 14:40 Coarse-grained reverse engineering of genetic regulatory networks (Mattias Wahde, Gteborg, Sweden)
14:40 - 15:20 Independent component analysis of gene expression (Wolfram Liebermeister, Berlin, Germany)
15:20 - 16:00 Two complementary methods for reverse engineering genetic networks (Pedro Mendes, Blacksburg, VA, USA)
16:00 - 16:30 Coffee break
16:30 - 17:10 Signaling cascades - amplifier, switch or feedback controller (Hanspeter Herzel, Berlin, Germany)
17:10 - 17:50 Constrained genetic network by imposing robustness (Marcel Reinders, Delft, The Netherlands)
17:50 - 18:30 General discussion (Chaired by Anne Morgat, Saint Martin, France)

19:00 Workshop dinner


Friday, 22nd


09:00 - 12:15 Session 3: Dynamics of Biochemical Processes

Chair: Marko Marhl, Maribor, Slovenia

09:00 - 09:40 Ca2+ puffs and waves in strongly buffered systems (Martin Falcke, Dresden, Germany)
09:40 - 10:20 Simulation of oscillations of NAD(P)H and reactive oxygen species in neutrophilic leukocytes (Lars F. Olsen, Odense, Denmark)
10:20 - 10:45 Coffee break
10:45 - 11:25 Hopf dynamics in a suspension of yeast cells (Preben G. Srensen, Copenhagen, Denmark)
11:25 - 12:15 General discussion (Chaired by Ursula Kummer, Heidelberg, Germany)

12:15 - 14:00 Lunch break and poster session


14:00 - 17:00 Session 4: Simulation of Biochemical Pathways

Chair: Wolfgang Wiechert, Siegen, Germany

14:00 - 14:40 Petri Net Based Pathway Models of Biochemical Networks for the Interpretation of Expression Data (Ralf Zimmer, Bonn, Germany)
14:40 - 15:20 Representation and simulation of molecular pathways in the stochastic pi-calculus (Aviv Regev, Tel Aviv, Israel)
15:20 - 15:50 Coffee break
15:50 - 16:30 An overview of the ERATO systems biology workbench project (Andrew Finney, Pasadena, CA, USA)
16:30 - 17:30 General discussion (Chaired by Pedro Mendes, Blacksburg, VA, USA)
17:30 End of workshop Privacy Imprint