The advanced pathway layout algorithm compared to examples from the BioCyc database

BioCyc example Advanced layout algorithm
(default options)
Advanced layout algorithm
(different min compounds in a cycle)

E. coli 12 Pathway: superpathway of glycolysis,
pyruvate dehydrogenase, TCA, and glyoxylate bypass

pathway


minimum number of compounds per cycle = 3 (default)

minimum number of compounds per cycle = 5

E. coli 12 Pathway: superpathway of glycolysis,
pyruvate dehydrogenase, TCA, and glyoxylate bypass

(in detail)

pathway


E. coli 12 Pathway: enterobacterial commom
antige biosynthesis

pathway

E. coli 12 Pathway: pyruvate oxidation pathway

pathway

E. coli 12 Pathway: glycogen degradation

pathway

E. coli 12 Pathway: glyoxylate cycle

pathway


Katja Wegner


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